Ugur Dogrusoz

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Chris SanderHarvard Medical School, Broad Institute, Dana-Farber Cancer Institute, Memorial Sloan KetteringVerified email at sanderlab.org
Ethan CeramiDirector, Knowledge Systems Group, Dana-Farber Cancer InstituteVerified email at jimmy.harvard.edu
Bulent Arman AksoyObsidian TherapeuticsVerified email at aksoy.org
Michael Heuerdishevelled.orgVerified email at acm.org
Yevgeniy AntipinAlgoGenomics LLCVerified email at algogenomicsllc.com
Boris RevaComputation Biology Center, Memorial Sloan-Kettering Cancer CenterVerified email at cbio.mskcc.org
Emek DemirOHSUVerified email at ohsu.edu
Arthur GoldbergAssociate Professor of Genetics and Genomic Sciences, Institute for Genomics & Multiscale BiologyVerified email at mssm.edu
Nikolaus SchultzCenter for Molecular Oncology, Memorial Sloan Kettering Cancer CenterVerified email at cbio.mskcc.org
Özgün BaburAssistant Professor at University of Massachusetts BostonVerified email at umb.edu
Anders Jacobsen SkanderupGenome Institute of SingaporeVerified email at gis.a-star.edu.sg
JianJiong GaoCaris Life SciencesVerified email at carisls.com
Erik Larsson LekholmSahlgrenska Academy, University of GothenburgVerified email at gu.se
Rileen SinhaH3 BiomedicineVerified email at broadinstitute.org
Gideon DresdnerETH ZürichVerified email at duck.com
Yichao SunMemorial Sloan Kettering Cancer CenterVerified email at mskcc.org
Augustin LunaResearch Associate | Dept. of Data Science, Dana-Farber Cancer Institute, Harvard Medical SchoolVerified email at mail.nih.gov
Falk SchreiberProfessor, University of Konstanz and Monash UniversityVerified email at uni-konstanz.de
Huaiyu MiPreventive Medicine, University of Southern CaliforniaVerified email at usc.edu
Anatoly SorokinOkinawa Institute of Science and TechnologyVerified email at oist.jp

Ugur Dogrusoz

Professor of Computer Engineering, Bilkent University, Ankara, Turkey

Verified email at cs.bilkent.edu.tr - Homepage

Graph Layout Information Visualization Big Data Analytics Bioinformatics Pathway Informatics


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The cBio cancer genomics portal: an open platform for exploring multidimensional cancer genomics data E Cerami, J Gao, U Dogrusoz, BE Gross, SO Sumer, BA Aksoy, ... Cancer discovery 2 (5), 401-404, 2012	13325	2012
Integrative analysis of complex cancer genomics and clinical profiles using the cBioPortal J Gao, BA Aksoy, U Dogrusoz, G Dresdner, B Gross, SO Sumer, Y Sun, ... Science signaling 6 (269), pl1-pl1, 2013	12521	2013
Oncogenic signaling pathways in the cancer genome atlas F Sanchez-Vega, M Mina, J Armenia, WK Chatila, A Luna, KC La, ... Cell 173 (2), 321-337. e10, 2018	2132	2018
The systems biology graphical notation NL Novère, M Hucka, H Mi, S Moodie, F Schreiber, A Sorokin, E Demir, ... Nature biotechnology 27 (8), 735-741, 2009	1015	2009
The BioPAX community standard for pathway data sharing E Demir, MP Cary, S Paley, K Fukuda, C Lemer, I Vastrik, G Wu, ... Nature biotechnology 28 (9), 935-942, 2010	763	2010
The cBio cancer genomics portal: an open platform for exploring multidimensional cancer genomics data. Cancer Discov. 2, 401–404. doi: 10.1158/2159-8290 E Cerami, J Gao, U Dogrusoz, BE Gross, SO Sumer, BA Aksoy, ... CD-12-0095 3, 223-229, 2012	547	2012
The cBio cancer genomics portal: an open platform for exploring multidimensional cancer genomics data. Cancer Discov. 2012; 2 (5): 401–404. doi: 10.1158/2159-8290 E Cerami, J Gao, U Dogrusoz, BE Gross, SO Sumer, BA Aksoy, ... CD-12-0095.[Europe PMC free article][Abstract][CrossRef][Google Scholar], 2012	397	2012
The cBio cancer genomics portal: an open platform for exploring multidimensional cancer genomics data. Cancer Discov. 2012; 2: 401–4. doi: 10.1158/2159-8290 E Cerami, J Gao, U Dogrusoz, BE Gross, SO Sumer, BA Aksoy, ... CD-12-0095, 2012	288	2012
Pathway Commons 2019 Update: integration, analysis and exploration of pathway data I Rodchenkov, O Babur, A Luna, BA Aksoy, JV Wong, D Fong, M Franz, ... Nucleic acids research 48 (D1), D489-D497, 2020	223	2020
Patika: an integrated visual environment for collaborative construction and analysis of cellular pathways E Demir, O Babur, U Dogrusoz, A Gursoy, G Nisanci, R Cetin-Atalay, ... Bioinformatics 18 (7), 996-1003, 2002	209	2002
The cBio cancer genomics portal: an open platform for exploring multidimensional cancer genomics data. Cancer Discov. 2012; 2: 401–4 E Cerami, J Gao, U Dogrusoz, BE Gross, SO Sumer, BA Aksoy, ...	138	2023
A layout algorithm for undirected compound graphs U Dogrusoz, E Giral, A Cetintas, A Civril, E Demir Information Sciences 179 (7), 980-994, 2009	127	2009
The cBio cancer genomics portal: an open platform for exploring multidimensional cancer genomics data. Cancer Discovery. 2012; 2: 401–404. doi: 10.1158/2159-8290 E Cerami, J Gao, U Dogrusoz, BE Gross, SO Sumer, BA Aksoy, ... CD-12-0095.[Europe PMC free article][Abstract][CrossRef][Google Scholar], 0	109
Software support for SBGN maps: SBGN-ML and LibSBGN MP Van Iersel, AC Villéger, T Czauderna, SE Boyd, FT Bergmann, A Luna, ... Bioinformatics 28 (15), 2016-2021, 2012	105	2012
.(2013) Integrative analysis of complex cancer genomics and clinical profiles using the cBioPortal J Gao, BA Aksoy, U Dogrusoz, G Dresdner, B Gross, SO Sumer, Y Sun, ... Sci. Signal 6 (269), 11, 2013	94	2013
This article is licensed under a Creative Commons Attribution 3.0 Unported Licence. Y. Antipin, B. Reva, AP Goldberg, C. Sander and N. Schultz E Cerami, J Gao, U Dogrusoz, BE Gross, SO Sumer, BA Aksoy, ... Cancer Discovery 2, 401-404, 2012	94	2012
Systems medicine disease maps: community-driven comprehensive representation of disease mechanisms A Mazein, M Ostaszewski, I Kuperstein, S Watterson, N Le Novère, ... NPJ systems biology and applications 4 (1), 21, 2018	87	2018
An ontology for collaborative construction and analysis of cellular pathways E Demir, O Babur, U Dogrusoz, A Gursoy, A Ayaz, G Gulesir, G Nisanci, ... Bioinformatics 20 (3), 349-356, 2004	80	2004
Circular layout in the graph layout toolkit U Doğrusöz, B Madden, P Madden International Symposium on Graph Drawing, 92-100, 1996	79	1996
The cBio cancer genomics portal: an open platform for exploring multidimensional cancer genomics data. Cancer Discov. 2012; 2: 401–04 E Cerami, J Gao, U Dogrusoz, BE Gross, SO Sumer, BA Aksoy, ...	78

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