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Christopher Andrew Penfold
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High-Resolution Temporal Profiling of Transcripts during Arabidopsis Leaf Senescence Reveals a Distinct Chronology of Processes and Regulation
E Breeze, E Harrison, S McHattie, L Hughes, R Hickman, C Hill, S Kiddle, ...
The Plant Cell 23 (3), 873-894, 2011
9242011
Arabidopsis Defense against Botrytis cinerea: Chronology and Regulation Deciphered by High-Resolution Temporal Transcriptomic Analysis
O Windram, P Madhou, S McHattie, C Hill, R Hickman, E Cooke, ...
The Plant Cell 24 (9), 3530-3557, 2012
3702012
How to infer gene networks from expression profiles, revisited
CA Penfold, DL Wild
Interface focus 1 (6), 857-870, 2011
2092011
A local regulatory network around three NAC transcription factors in stress responses and senescence in A rabidopsis leaves
R Hickman, C Hill, CA Penfold, E Breeze, L Bowden, JD Moore, P Zhang, ...
The Plant Journal 75 (1), 26-39, 2013
2072013
Transcriptional dynamics driving MAMP-triggered immunity and pathogen effector-mediated immunosuppression in Arabidopsis leaves following infection with Pseudomonas syringae pv …
LA Lewis, K Polanski, M de Torres-Zabala, S Jayaraman, L Bowden, ...
The Plant Cell 27 (11), 3038-3064, 2015
1762015
Time-Series Transcriptomics Reveals That AGAMOUS-LIKE22 Affects Primary Metabolism and Developmental Processes in Drought-Stressed Arabidopsis
U Bechtold, CA Penfold, DJ Jenkins, R Legaie, JD Moore, T Lawson, ...
The Plant Cell 28 (2), 345-366, 2016
1212016
Stella modulates transcriptional and endogenous retrovirus programs during maternal-to-zygotic transition
Y Huang, JK Kim, DV Do, C Lee, CA Penfold, JJ Zylicz, JC Marioni, ...
Elife 6, e22345, 2017
932017
Spatial profiling of early primate gastrulation in utero
S Bergmann, CA Penfold, E Slatery, D Siriwardena, C Drummer, S Clark, ...
Nature 609 (7925), 136-143, 2022
712022
Modelling transcriptional networks in leaf senescence
CA Penfold, V Buchanan-Wollaston
Journal of experimental botany 65 (14), 3859-3873, 2014
692014
Nonparametric Bayesian inference for perturbed and orthologous gene regulatory networks
CA Penfold, V Buchanan-Wollaston, KJ Denby, DL Wild
Bioinformatics 28 (12), i233-i241, 2012
522012
Tracing the emergence of primordial germ cells from bilaminar disc rabbit embryos and pluripotent stem cells
T Kobayashi, A Castillo-Venzor, CA Penfold, M Morgan, N Mizuno, ...
Cell reports 37 (2), 2021
462021
Network modeling to understand plant immunity
O Windram, CA Penfold, KJ Denby
Annual review of phytopathology 52 (1), 93-111, 2014
412014
Sequential enhancer state remodelling defines human germline competence and specification
WWC Tang, A Castillo-Venzor, WH Gruhn, T Kobayashi, CA Penfold, ...
Nature cell biology 24 (4), 448-460, 2022
352022
Comparative transcriptome analysis in Arabidopsis ein2/ore3 and ahk3/ore12 mutants during dark-induced leaf senescence
J Kim, SJ Park, IH Lee, H Chu, CA Penfold, JH Kim, ...
Journal of Experimental Botany 69 (12), 3023-3036, 2018
352018
Inferring the perturbation time from biological time course data
J Yang, CA Penfold, MR Grant, M Rattray
Bioinformatics 32 (19), 2956-2964, 2016
272016
Modeling meiotic chromosomes indicates a size dependent contribution of telomere clustering and chromosome rigidity to homologue juxtaposition
CA Penfold, PE Brown, ND Lawrence, ASH Goldman
PLoS computational biology 8 (5), e1002496, 2012
262012
CSI: a nonparametric Bayesian approach to network inference from multiple perturbed time series gene expression data
C Penfold, A Shifaz, P Brown, A Nicholson, D Wild
Statistical Applications in Genetics and Molecular Biology 14 (3), 307, 2015
252015
Time‐series transcriptomics reveals a BBX32‐directed control of acclimation to high light in mature Arabidopsis leaves
R Alvarez‐Fernandez, CA Penfold, G Galvez‐Valdivieso, ...
The Plant Journal 107 (5), 1363-1386, 2021
22*2021
A hexa-species transcriptome atlas of mammalian embryogenesis delineates metabolic regulation across three different implantation modes
A Malkowska, C Penfold, S Bergmann, TE Boroviak
Nature communications 13 (1), 3407, 2022
202022
Inferring orthologous gene regulatory networks using interspecies data fusion
CA Penfold, JBA Millar, DL Wild
Bioinformatics 31 (12), i97-i105, 2015
202015
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