José Lourenço

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Citations	9358	8118
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Sunetra GuptaProfessor of Theoretical EpidemiologyVerified email at biology.ox.ac.uk
Uri ObolskiTel Aviv UniversityVerified email at tauex.tau.ac.il
Oliver PybusUniversity of Oxford / Royal Veterinary CollegeVerified email at zoo.ox.ac.uk
Nuno Rodrigues FariaProfessor, Imperial College London / University of São PauloVerified email at ic.ac.uk
Philippa C. MatthewsThe Francis Crick Institute | University College LondonVerified email at doctors.org.uk
Moritz U G KraemerAssociate Professor, University of OxfordVerified email at biology.ox.ac.uk
Ester Cerdeira SabinoUniversidade de Sao PauloVerified email at usp.br
Julien ThézéINRAE, Université Clermont AuvergneVerified email at inrae.fr
Martin C. J. MaidenProfessor of Molecular Epidemiology, University of OxfordVerified email at biology.ox.ac.uk
Christian Julian Villabona ArenasAssistant Professor at London School of Hygiene & Tropical MedicineVerified email at lshtm.ac.uk
T Alex PerkinsAssociate Professor of Biological Sciences, University of Notre DameVerified email at nd.edu
Isabel Rodríguez-BarraquerUniversity of California, San FranciscoVerified email at ucsf.edu
Ira LonginiPofessor of BiostatisticsVerified email at ufl.edu
laurent coudevillesanofi pasteurVerified email at sanofipasteur.com
Carl A. B. PearsonLondon School of Hygiene and Tropical MedicineVerified email at lshtm.ac.uk
Derek A.T. CummingsProfessor, Dept. of Biology, Univ. of Florida and Adj. Professor, Dept. of Epidemiology, JHBSPHVerified email at ufl.edu
Katia KoelleProfessor of Biology, Emory UniversityVerified email at emory.edu
Antonio Charlys da CostaInstituto de Medicina TropicalVerified email at unifesp.br
Mark JitProfessor, London School of Hygiene & Tropical MedicineVerified email at lshtm.ac.uk
Neil FergusonImperial CollegeVerified email at imperial.ac.uk

José Lourenço

RA @ University of Oxford | PI, Prof @ Universidade Católica Portuguesa

Verified email at ucp.pt - Homepage

Ecology of Infectious Disease Computational Biology


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Detection of a SARS-CoV-2 variant of concern in South Africa H Tegally, E Wilkinson, M Giovanetti, A Iranzadeh, V Fonseca, ... Nature 592 (7854), 438-443, 2021	1449	2021
Emergence and rapid spread of a new severe acute respiratory syndrome-related coronavirus 2 (SARS-CoV-2) lineage with multiple spike mutations in South Africa H Tegally, E Wilkinson, M Giovanetti, A Iranzadeh, V Fonseca, ... medrxiv, 2020.12. 21.20248640, 2020	1194	2020
Zika virus in the Americas: early epidemiological and genetic findings NR Faria, RSS Azevedo, MUG Kraemer, R Souza, MS Cunha, SC Hill, ... Science 352 (6283), 345-349, 2016	1176	2016
Escape of SARS-CoV-2 501Y.V2 from neutralization by convalescent plasma Nature, 2021	664	2021
Sixteen novel lineages of SARS-CoV-2 in South Africa H Tegally, E Wilkinson, RJ Lessells, J Giandhari, S Pillay, N Msomi, ... Nature medicine 27 (3), 440-446, 2021	361	2021
Genomic and epidemiological monitoring of yellow fever virus transmission potential NR Faria, MUG Kraemer, S Hill, JG de Jesus, RS de Aguiar, FCM Iani, ... Science 361, 894-899, 2018	315	2018
Kosakovsky Pond SL, Weaver S, Martin D, Lessells RJ, Bhiman JN, Williamson C, de Oliveira T. Detection of a SARS-CoV-2 variant of concern in South Africa H Tegally, E Wilkinson, M Giovanetti, A Iranzadeh, V Fonseca, ... Nature 592 (7854), 438-443, 2021	214	2021
Multiplex qPCR discriminates variants of concern to enhance global surveillance of SARS-CoV-2 PLOS Biology, 2021	208	2021
The long-term safety, public health impact, and cost-effectiveness of routine vaccination with a recombinant, live-attenuated dengue vaccine (Dengvaxia): a model comparison study S Flasche, M Jit, I Rodríguez-Barraquer, L Coudeville, M Recker, K Koelle, ... PLoS medicine 13 (11), e1002181, 2016	200	2016
Estimating the false-negative test probability of SARS-CoV-2 by RT-PCR PS Wikramaratna, RS Paton, M Ghafari, J Lourenço Eurosurveillance 25 (50), 2000568, 2020	183	2020
Estimating false-negative detection rate of SARS-CoV-2 by RT-PCR P Wikramaratna, RS Paton, M Ghafari, J Lourenco Eurosurveillance, 2017	157	2017
Emergence of a SARS-CoV-2 variant of concern with mutations in spike glycoprotein H Tegally, E Wilkinson, M Giovanetti, A Iranzadeh, V Fonseca, ... Nature 592 (7854), 438-443, 2021	145	2021
The 2012 Madeira dengue outbreak: epidemiological determinants and future epidemic potential J Lourenço, M Recker PLoS neglected tropical diseases 8 (8), e3083, 2014	127	2014
Epidemiology of chikungunya virus in Bahia, Brazil, 2014-2015 NR Faria, J Lourenço, EM de Cerqueira, MM de Lima, O Pybus, ... PLoS currents 8, 2016	119	2016
Gripenet: an internet-based system to monitor influenza-like illness uniformly across Europe. SP Van Noort, M Muehlen, AH Rebelo, C Koppeschaar, LJM Lima, ... Euro surveillance: bulletin européen sur les maladies transmissibles …, 2007	109	2007
Early transmission of SARS-CoV-2 in South Africa: An epidemiological and phylogenetic report J Giandhari, S Pillay, E Wilkinson, H Tegally, I Sinayskiy, M Schuld, ... International Journal of Infectious Diseases 103, 234-241, 2021	105	2021
Genomic, epidemiological and digital surveillance of Chikungunya virus in the Brazilian Amazon FG Naveca, I Claro, M Giovanetti, JG de Jesus, J Xavier, FCM Iani, ... PLoS neglected tropical diseases 13 (3), e0007065, 2019	105	2019
Epidemiological and ecological determinants of Zika virus transmission in an urban setting. J Lourenco, MM de Lima, NR Faria, A Walker, MUG Kraemer, ... eLife, 2017	97	2017
Spread of chikungunya virus east/central/south African genotype in northeast Brazil AC da Costa, J Thézé, SCV Komninakis, RL Sanz-Duro, MRL Felinto, ... Emerging infectious diseases 23 (10), 1742, 2017	88	2017
High residual carriage of vaccine-serotype Streptococcus pneumoniae after introduction of pneumococcal conjugate vaccine in Malawi TD Swarthout, C Fronterre, J Lourenço, U Obolski, A Gori, N Bar-Zeev, ... Nature communications 11 (1), 2222, 2020	86	2020

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