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Johannes C. Paetzold
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The liver tumor segmentation benchmark (lits)
P Bilic, P Christ, HB Li, E Vorontsov, A Ben-Cohen, G Kaissis, A Szeskin, ...
Medical Image Analysis 84, 102680, 2023
8832023
Machine learning analysis of whole mouse brain vasculature
MI Todorov*, JC Paetzold*, O Schoppe, G Tetteh, S Shit, V Efremov, ...
Nature Methods 17 (4), 442-449, 2020
242*2020
Cellular and molecular probing of intact human organs
S Zhao, MI Todorov, R Cai, AIM Rami, H Steinke, E Kemter, H Mai, ...
Cell 180 (4), 796-812. e19, 2020
2082020
clDice - a Topology-Preserving Loss Function for Tubular Structure Segmentation
S Shit*, JC Paetzold*, A Sekuboyina, A Zhylka, I Ezhov, A Unger, ...
Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern …, 2021
173*2021
VerSe: a vertebrae labelling and segmentation benchmark for multi-detector CT images
A Sekuboyina, ME Husseini, A Bayat, M Löffler, H Liebl, H Li, G Tetteh, ...
Medical image analysis 73, 102166, 2021
1672021
An automatic multi-tissue human fetal brain segmentation benchmark using the fetal tissue annotation dataset
K Payette, P de Dumast, H Kebiri, I Ezhov, JC Paetzold, S Shit, A Iqbal, ...
Scientific data 8 (1), 167, 2021
95*2021
DiamondGAN: Unified Multi-modal Generative Adversarial Networks for MRI Sequences Synthesis
BM Hongwei Li*, Johannes C. Paetzold*, Anjany Sekuboyina, Florian Kofler ...
International Conference on Medical Image Computing and Computer-Assisted …, 2019
83*2019
Shape-aware complementary-task learning for multi-organ segmentation
F Navarro, S Shit, I Ezhov, J Paetzold, A Gafita, JC Peeken, SE Combs, ...
Machine Learning in Medical Imaging: 10th International Workshop, MLMI 2019 …, 2019
69*2019
Red-GAN: Attacking class imbalance via conditioned generation. Yet another medical imaging perspective.
AB Qasim, I Ezhov, S Shit, O Schoppe, JC Paetzold, A Sekuboyina, ...
Medical imaging with deep learning, 655-668, 2020
58*2020
Spatial proteomics in three-dimensional intact specimens
HS Bhatia, AD Brunner, F Öztürk, S Kapoor, Z Rong, H Mai, M Thielert, ...
Cell 185 (26), 5040-5058. e19, 2022
37*2022
Verse: a vertebrae labelling and segmentation benchmark
A Sekuboyina, A Bayat, ME Husseini, M Löffler, M Rempfler, J Kukačka, ...
362020
Anthropogenic CO2 emissions assessment of Nile Delta using XCO2 and SIF data from OCO-2 satellite
A Shekhar, J Chen, JC Paetzold, F Dietrich, X Zhao, S Bhattacharjee, ...
Environmental Research Letters 15 (9), 095010, 2020
342020
Are we using appropriate segmentation metrics? Identifying correlates of human expert perception for CNN training beyond rolling the DICE coefficient
F Kofler, I Ezhov, F Isensee, F Balsiger, C Berger, M Koerner, B Demiray, ...
arXiv preprint arXiv:2103.06205, 2021
322021
Relationformer: A Unified Framework for Image-to-Graph Generation
S Shit, R Koner, B Wittmann, J Paetzold, I Ezhov, H Li, J Pan, ...
ECCV 2022, 2022
272022
Assessing urban methane emissions using column-observing portable Fourier transform infrared (FTIR) spectrometers and a novel Bayesian inversion framework
TS Jones, JE Franklin, J Chen, F Dietrich, KD Hajny, JC Paetzold, ...
Atmospheric Chemistry and Physics 21 (17), 13131-13147, 2021
26*2021
Whole brain vessel graphs: A dataset and benchmark for graph learning and neuroscience
JC Paetzold, J McGinnis, S Shit, I Ezhov, P Büschl, C Prabhakar, ...
Thirty-Fifth Conference on Neural Information Processing Systems Datasets …, 2021
21*2021
Geometry-aware neural solver for fast Bayesian calibration of brain tumor models
I Ezhov, T Mot, S Shit, J Lipkova, JC Paetzold, F Kofler, C Pellegrini, ...
IEEE Transactions on Medical Imaging 41 (5), 1269-1278, 2021
20*2021
Differentially Private Graph Neural Networks for Whole-Graph Classification
TT Mueller, JC Paetzold, C Prabhakar, D Usynin, D Rueckert, G Kaissis
IEEE Transactions on Pattern Analysis and Machine Intelligence, 2022
19*2022
Whole-body cellular mapping in mouse using standard IgG antibodies
H Mai, J Luo, L Hoeher, R Al-Maskari, I Horvath, Y Chen, F Kofler, ...
Nature Biotechnology, 1-11, 2023
15*2023
A distance-based loss for smooth and continuous skin layer segmentation in optoacoustic images
S Gerl*, JC Paetzold*, H He*, I Ezhov, S Shit, F Kofler, A Bayat, G Tetteh, ...
International Conference on Medical Image Computing and Computer-Assisted …, 2020
142020
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