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Karsten Hokamp
Karsten Hokamp
Bioinformatics Research Officer, Smurfit Institute of Genetics, Trinity College Dublin
Verified email at tcd.ie
Title
Cited by
Cited by
Year
Initial sequencing and analysis of the human genome
ES Lander, LM Linton, B Birren, C Nusbaum, MC Zody, J Baldwin, ...
Nature 409 (6822), 860-921, 2001
24839*2001
A recent polyploidy superimposed on older large-scale duplications in the Arabidopsis genome
G Blanc, K Hokamp, KH Wolfe
Genome research 13 (2), 137-144, 2003
8712003
Modulation of the TLR-mediated inflammatory response by the endogenous human host defense peptide LL-37
N Mookherjee, KL Brown, DME Bowdish, S Doria, R Falsafi, K Hokamp, ...
The Journal of Immunology 176 (4), 2455-2464, 2006
7282006
Extensive genomic duplication during early chordate evolution
A McLysaght, K Hokamp, KH Wolfe
Nature genetics 31 (2), 200-204, 2002
6492002
An infection-relevant transcriptomic compendium for Salmonella enterica Serovar Typhimurium
C Kröger, A Colgan, S Srikumar, K Händler, SK Sivasankaran, ...
Cell host & microbe 14 (6), 683-695, 2013
5162013
The transcriptional landscape and small RNAs of Salmonella enterica serovar Typhimurium
C Kröger, SC Dillon, ADS Cameron, K Papenfort, SK Sivasankaran, ...
Proceedings of the National Academy of Sciences 109 (20), E1277-E1286, 2012
4732012
InnateDB: facilitating systems‐level analyses of the mammalian innate immune response
DJ Lynn, GL Winsor, C Chan, N Richard, MR Laird, A Barsky, JL Gardy, ...
Molecular systems biology 4 (1), 218, 2008
4232008
Circadian clock protein BMAL1 regulates IL-1β in macrophages via NRF2
JO Early, D Menon, CA Wyse, MP Cervantes-Silva, Z Zaslona, RG Carroll, ...
Proceedings of the National Academy of Sciences 115 (36), E8460-E8468, 2018
3132018
Circadian control of innate immunity in macrophages by miR-155 targeting Bmal1
AM Curtis, CT Fagundes, G Yang, EM Palsson-McDermott, P Wochal, ...
Proceedings of the National Academy of Sciences 112 (23), 7231-7236, 2015
3122015
RNA-seq brings new insights to the intra-macrophage transcriptome of Salmonella Typhimurium
S Srikumar, C Kröger, M Hébrard, A Colgan, SV Owen, SK Sivasankaran, ...
PLoS pathogens 11 (11), e1005262, 2015
2622015
The extracellular leucine-rich repeat superfamily; a comparative survey and analysis of evolutionary relationships and expression patterns
J Dolan, K Walshe, S Alsbury, K Hokamp, S O'Keeffe, T Okafuji, ...
BMC genomics 8, 1-24, 2007
2022007
Effect of stress on viral–bacterial synergy in bovine respiratory disease: novel mechanisms to regulate inflammation
PD Hodgson, P Aich, A Manuja, K Hokamp, FM Roche, FSL Brinkman, ...
Comparative and functional genomics 6 (4), 244-250, 2005
1892005
Altered retinal microRNA expression profile in a mouse model of retinitis pigmentosa
CJ Loscher, K Hokamp, PF Kenna, AC Ivens, P Humphries, A Palfi, ...
Genome biology 8, 1-12, 2007
1752007
Receptor‐mediated recognition of mycobacterial pathogens
KE Killick, C Ní Cheallaigh, C O'farrelly, K Hokamp, DE MacHugh, J Harris
Cellular microbiology 15 (9), 1484-1495, 2013
1622013
A Family of Vertebrate-Specific Polycombs Encoded by the LCOR/LCORL Genes Balance PRC2 Subtype Activities
E Conway, E Jerman, E Healy, S Ito, D Holoch, G Oliviero, O Deevy, ...
Molecular cell 70 (3), 408-421. e8, 2018
1522018
Bovine and human cathelicidin cationic host defense peptides similarly suppress transcriptional responses to bacterial lipopolysaccharide
N Mookherjee, HL Wilson, S Doria, Y Popowych, R Falsafi, JJ Yu, YX Li, ...
Journal of leukocyte biology 80 (6), 1563-1574, 2006
1372006
The impact of 18 ancestral and horizontally-acquired regulatory proteins upon the transcriptome and sRNA landscape of Salmonella enterica serovar Typhimurium
AM Colgan, C Kröger, M Diard, WD Hardt, JL Puente, SK Sivasankaran, ...
PLoS genetics 12 (8), e1006258, 2016
1352016
A model system for studying the transcriptomic and physiological changes associated with mammalian host-adaptation by Leptospira interrogans serovar Copenhageni
MJ Caimano, SK Sivasankaran, A Allard, D Hurley, K Hokamp, ...
PLoS pathogens 10 (3), e1004004, 2014
1112014
The complex relationship of gene duplication and essentiality
T Makino, K Hokamp, A McLysaght
Trends in genetics 25 (4), 152-155, 2009
1112009
Characterization of protein C receptor expression in monocytes
L Galligan, W Livingstone, Y Volkov, K Hokamp, C Murphy, M Lawler, ...
British journal of haematology 115 (2), 408-414, 2001
1112001
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