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Karina S. Machado
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Characterization of glucose-tolerant β-glucosidases used in biofuel production under the bioinformatics perspective: A systematic review
DCB Mariano, C Leite, LHS Santos, LF Marins, KS Machado, AV Werhli, ...
Genet. Mol. Res 16, 1-19, 2017
342017
In vitro and in silico analysis of the efficiency of tetrahydropyridines as drug efflux inhibitors in Escherichia coli
L Silva Jr, LL Carrion, A von Groll, SS Costa, E Junqueira, DF Ramos, ...
International journal of antimicrobial agents 49 (3), 308-314, 2017
312017
Decrypting strong and weak single-walled carbon nanotubes interactions with mitochondrial voltage-dependent anion channels using molecular docking and perturbation theory
M González-Durruthy, AV Werhli, V Seus, KS Machado, A Pazos, ...
Scientific Reports 7 (1), 13271, 2017
302017
Automatic design of decision-tree induction algorithms tailored to flexible-receptor docking data
RC Barros, AT Winck, KS Machado, MP Basgalupp, AC de Carvalho, ...
BMC bioinformatics 13 (1), 1-14, 2012
302012
KORP-PL: a coarse-grained knowledge-based scoring function for protein-ligand interactions
M Kadukova, KS Machado, P Chacón, S Grudinin
Bioinformatics, 2020
272020
Mining flexible-receptor docking experiments to select promising protein receptor snapshots
KS Machado, AT Winck, DDA Ruiz, ON de Souza
BMC genomics 11 (5), S6, 2010
272010
Desenvolvendo o Raciocínio Lógico no Ensino Médio: uma proposta utilizando a ferramenta Scratch
FP Mota, NFA Ribeiro, L Emmendorfer, P Butzen, KS Machado, ...
Brazilian Symposium on Computers in Education (Simpósio Brasileiro de …, 2014
222014
Mineração de dados em triagem de risco de saúde
TV Maciel, V da Rosa Seus, K dos Santos Machado, EN Borges
Revista Brasileira de Computação Aplicada 7 (2), 26-40, 2015
212015
Effect of the explicit flexibility of the InhA enzyme from Mycobacterium tuberculosis in molecular docking simulations
EML Cohen, KS Machado, M Cohen, ON de Souza
BMC genomics 12 (4), S7, 2011
212011
Automating molecular docking with explicit receptor flexibility using scientific workflows
KS Machado, EK Schroeder, DD Ruiz, ON De Souza
Brazilian Symposium On Bioinformatics, 1-11, 2007
212007
Inference of regulatory networks with a convergence improved MCMC sampler
NB Agostinho, KS Machado, AV Werhli
BMC bioinformatics 16 (1), 1-10, 2015
202015
FReDoWS: a method to automate molecular docking simulations with explicit receptor flexibility and snapshots selection
KS Machado, EK Schroeder, DD Ruiz, EML Cohen, ON de Souza
BMC genomics 12 (4), 1-13, 2011
182011
Silencing the OCT4-PG1 pseudogene reduces OCT-4 protein levels and changes characteristics of the multidrug resistance phenotype in chronic myeloid leukemia
AP Lettnin, EF Wagner, M Carrett-Dias, K dos Santos Machado, A Werhli, ...
Molecular biology reports 46 (2), 1873-1884, 2019
172019
A Computational Method to Propose Mutations in Enzymes Based on Structural Signature Variation (SSV)
DCB Mariano, LH Santos, KS Machado, AV Werhli, LHF de Lima, ...
International journal of molecular sciences 20 (2), 333, 2019
172019
A methodology for selecting the most suitable cluster validation internal indices
C Tomasini, L Emmendorfer, EN Borges, K Machado
Proceedings of the 31st Annual ACM Symposium on Applied Computing, 901-903, 2016
172016
Predicting the binding properties of single walled carbon nanotubes (SWCNT) with an ADP/ATP mitochondrial carrier using molecular docking, chemoinformatics, and nano-QSBR …
M González-Durruthy, AV Werhli, L Cornetet, KS Machado, ...
RSC Advances 6 (63), 58680-58693, 2016
172016
Molecular modelling and competitive inhibition of a Mycobacterium tuberculosis multidrug-resistance efflux pump
JLR Scaini, AD Camargo, VR Seus, A von Groll, AV Werhli, PEA da Silva, ...
Journal of Molecular Graphics and Modelling 87, 98-108, 2019
162019
Mining flexible‐receptor molecular docking data
KS Machado, AT Winck, DD Ruiz, O Norberto de Souza
Wiley Interdisciplinary Reviews: Data Mining and Knowledge Discovery 1 (6 …, 2011
162011
A higher flexibility at the SARS-CoV-2 main protease active site compared to SARS-CoV and its potentialities for new inhibitor virtual screening targeting multi-conformers
REO Rocha, EJF Chaves, PHC Fischer, LSC Costa, IB Grillo, ...
Journal of Biomolecular Structure and Dynamics 40 (19), 9214-9234, 2022
152022
Graphene oxide and GST-omega enzyme: An interaction that affects arsenic metabolism in the shrimp Litopenaeus vannamei
ME Josende, SM Nunes, R de Oliveira Lobato, M González-Durruthy, ...
Science of The Total Environment 716, 136893, 2020
152020
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