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André Elias Rodrigues Soares
André Elias Rodrigues Soares
National Bioinformatics Infrastructure of Sweden (NBIS), SciLifeLab, Uppsala University, Sweden
Verified email at ebc.uu.se
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Cited by
Year
Dense sampling of bird diversity increases power of comparative genomics
S Feng, J Stiller, Y Deng, J Armstrong, QI Fang, AH Reeve, D Xie, G Chen, ...
Nature 587 (7833), 252-257, 2020
3152020
Bison phylogeography constrains dispersal and viability of the Ice Free Corridor in western Canada
PD Heintzman, D Froese, JW Ives, AER Soares, GD Zazula, B Letts, ...
Proceedings of the National Academy of Sciences 113 (29), 8057-8063, 2016
1812016
Ancient genomes from North Africa evidence prehistoric migrations to the Maghreb from both the Levant and Europe
R Fregel, FL Méndez, Y Bokbot, D Martín-Socas, MD Camalich-Massieu, ...
Proceedings of the National Academy of Sciences 115 (26), 6774-6779, 2018
1532018
Natural selection shaped the rise and fall of passenger pigeon genomic diversity
GGR Murray, AER Soares, BJ Novak, NK Schaefer, JA Cahill, AJ Baker, ...
Science 358 (6365), 951-954, 2017
1332017
Fossil and genomic evidence constrains the timing of bison arrival in North America
D Froese, M Stiller, PD Heintzman, AV Reyes, GD Zazula, AER Soares, ...
Proceedings of the National Academy of Sciences 114 (13), 3457-3462, 2017
952017
Inferring species divergence times using pairwise sequential Markovian coalescent modelling and low-coverage genomic data
JA Cahill, AER Soares, RE Green, B Shapiro
Philosophical Transactions of the Royal Society B: Biological Sciences 371 …, 2016
682016
Genomic evidence of widespread admixture from polar bears into brown bears during the last ice age
JA Cahill, PD Heintzman, K Harris, MD Teasdale, J Kapp, AER Soares, ...
Molecular Biology and Evolution 35 (5), 1120-1129, 2018
652018
Parrot genomes and the evolution of heightened longevity and cognition
M Wirthlin, NCB Lima, RLM Guedes, AER Soares, LGP Almeida, ...
Current Biology 28 (24), 4001-4008. e7, 2018
622018
Complete mitochondrial genomes of living and extinct pigeons revise the timing of the columbiform radiation
AER Soares, BJ Novak, J Haile, TH Heupink, J Fjeldsĺ, MTP Gilbert, ...
BMC Evolutionary Biology 16, 1-9, 2016
532016
Mitogenomics of the Extinct Cave Lion, Panthera spelaea (Goldfuss, 1810), Resolve its Position within the Panthera Cats
R Barnett, MLZ Mendoza, AER Soares, SYW Ho, G Zazula, N Yamaguchi, ...
Open Quaternary 2 (4), 1-11, 2016
472016
An ancient bison from the mouth of the Rauchua River (Chukotka, Russia)
IV Kirillova, OG Zanina, OF Chernova, EG Lapteva, SS Trofimova, ...
Quaternary Research 84 (2), 232-245, 2015
432015
Combining fossil and molecular data to date the diversification of New World Primates
CG Schrago, B Mello, AER Soares
Journal of Evolutionary Biology 26 (11), 2438-2446, 2013
432013
The influence of taxon sampling on Bayesian divergence time inference under scenarios of rate heterogeneity among lineages
AER Soares, CG Schrago
Journal of Theoretical Biology 364, 31-39, 2015
372015
Demographic reconstruction from ancient DNA supports rapid extinction of the great auk
JE Thomas, GR Carvalho, J Haile, NJ Rawlence, MD Martin, SYW Ho, ...
Elife 8, e47509, 2019
332019
The Influence of Taxon Sampling and Tree Shape on Molecular Dating: An Empirical Example from Mammalian Mitochondrial Genomes
AER Soares, CG Schrago
Bioinformatics and Biology Insights, 129-143, 2012
222012
Comparative genomics of MRSA strains from human and canine origins reveals similar virulence gene repertoire
B Penna, MB Silva, AER Soares, ATR Vasconcelos, MS Ramundo, ...
Scientific reports 11 (1), 4724, 2021
212021
Paleogenomics
BS Peter D Heintzman*, Andre E R Soares*, Dan Chang
Reviews in Cell Biology and Molecular Medicine 1 (3), 243–267, 2015
19*2015
Morphological and genetic identification and isotopic study of the hair of a cave lion (Panthera spelaea Goldfuss, 1810) from the Malyi Anyui River (Chukotka, Russia)
OF Chernova, IV Kirillova, B Shapiro, FK Shidlovskiy, AER Soares, ...
Quaternary Science Reviews 142, 61-73, 2016
122016
Positive selection on HIV accessory proteins and the analysis of molecular adaptation after interspecies transmission
AER Soares, MA Soares, CG Schrago
Journal of molecular evolution 66, 598-604, 2008
112008
Comparative mitogenomic analyses of Amazona parrots and Psittaciformes
NCB Lima, AER Soares, LGP Almeida, IR Costa, FM Sato, P Schneider, ...
Genetics and molecular biology 41, 593-604, 2018
102018
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