Nilesh Banavali
Nilesh Banavali
Research Scientist, Wadsworth Center; Assistant Professor, State University of New York at Albany
Verified email at - Homepage
Cited by
Cited by
Development and current status of the CHARMM force field for nucleic acids
AD MacKerell Jr, N Banavali, N Foloppe
Biopolymers: Original Research on Biomolecules 56 (4), 257-265, 2000
All‐atom empirical force field for nucleic acids: II. Application to molecular dynamics simulations of DNA and RNA in solution
AD MacKerell Jr, NK Banavali
Journal of computational chemistry 21 (2), 105-120, 2000
Free energy and structural pathways of base flipping in a DNA GCGC containing sequence
NK Banavali, AD MacKerell Jr
Journal of Molecular Biology 319 (1), 141-160, 2002
Protein-facilitated base flipping in DNA by cytosine-5-methyltransferase
N Huang, NK Banavali, AD MacKerell
Proceedings of the National Academy of Sciences 100 (1), 68-73, 2003
Free energy landscape of A-DNA to B-DNA conversion in aqueous solution
NK Banavali, B Roux
Journal of the American Chemical Society 127 (18), 6866-6876, 2005
Mapping the conformational transition in Src activation by cumulating the information from multiple molecular dynamics trajectories
S Yang, NK Banavali, B Roux
Proceedings of the National Academy of Sciences 106 (10), 3776-3781, 2009
Atomic radii for continuum electrostatics calculations on nucleic acids
NK Banavali, B Roux
The Journal of Physical Chemistry B 106 (42), 11026-11035, 2002
Existing drugs as broad-spectrum and potent inhibitors for Zika virus by targeting NS2B-NS3 interaction
Z Li, M Brecher, YQ Deng, J Zhang, S Sakamuru, B Liu, R Huang, ...
Cell Research 27 (8), 1046-1064, 2017
Use of oligodeoxyribonucleotides with conformationally constrained abasic sugar targets to probe the mechanism of base flipping by Hha I DNA (cytosine C5)-methyltransferase
P Wang, AS Brank, NK Banavali, MC Nicklaus, VE Marquez, ...
Journal of the American Chemical Society 122 (50), 12422-12434, 2000
Caught in the act: visualization of an intermediate in the DNA base-flipping pathway induced by HhaI methyltransferase
JR Horton, G Ratner, NK Banavali, N Huang, Y Choi, MA Maier, ...
Nucleic Acids Research 32 (13), 3877-3886, 2004
The N-terminal end of the catalytic domain of Src kinase Hck is a conformational switch implicated in long-range allosteric regulation
NK Banavali, B Roux
Structure 13 (11), 1715-1723, 2005
Anatomy of a structural pathway for activation of the catalytic domain of Src kinase Hck
NK Banavali, B Roux
Proteins: Structure, Function, and Bioinformatics 67 (4), 1096-1112, 2007
Electrostatic free energy calculations using the generalized solvent boundary potential method
NK Banavali, W Im, B Roux
The Journal of Chemical Physics 117 (15), 7381-7388, 2002
Flexibility and charge asymmetry in the activation loop of Src tyrosine kinases
NK Banavali, B Roux
Proteins: Structure, Function, and Bioinformatics 74 (2), 378-389, 2009
Post-translational environmental switch of RadA activity by extein-intein interactions in protein splicing.
NI Topilina, O Novikova, M Stanger, NK Banavali, M Belfort
Nucleic Acids Research 43 (13), 6631-6648, 2015
Insertion domain within mammalian mitochondrial translation initiation factor 2 serves the role of eubacterial initiation factor 1
AS Yassin, ME Haque, PP Datta, K Elmore, NK Banavali, LL Spremulli, ...
Proceedings of the National Academy of Sciences 108 (10), 3918-3923, 2011
Selective inhibition of the West Nile virus methyltransferase by nucleoside analogs
H Chen, L Liu, SA Jones, NK Banavali, J Kass, Z Li, J Zhang, LD Kramer, ...
Antiviral Research 97 (3), 232-239, 2013
Reevaluation of stereoelectronic contributions to the conformational properties of the phosphodiester and N3 ‘-phosphoramidate moieties of nucleic acids
NK Banavali, AD MacKerell
Journal of the American Chemical Society 123 (28), 6747-6755, 2001
Novel Broad Spectrum Inhibitors Targeting the Flavivirus Methyltransferase.
M Brecher, H Chen, B Liu, NK Banavali, SA Jones, J Zhang, Z Li, ...
PLoS One 10 (6), e0130062, 2015
Cloning and characterization of the gene encoding 1-cyclohexenylcarbonyl coenzyme A reductase from Streptomyces collinus.
P Wang, CD Denoya, MR Morgenstern, DD Skinner, KK Wallace, ...
Journal of Bacteriology 178 (23), 6873-6881, 1996
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