| Scirpy: a Scanpy extension for analyzing single-cell T-cell receptor-sequencing data G Sturm, T Szabo, G Fotakis, M Haider, D Rieder, Z Trajanoski, F Finotello Bioinformatics 36 (18), 4817-4818, 2020 | 119 | 2020 |
| High-resolution single-cell atlas reveals diversity and plasticity of tissue-resident neutrophils in non-small cell lung cancer S Salcher, G Sturm, L Horvath, G Untergasser, C Kuempers, G Fotakis, ... Cancer cell 40 (12), 1503-1520. e8, 2022 | 107 | 2022 |
| Comprehensive characterization of the prostate tumor microenvironment identifies CXCR4/CXCL12 crosstalk as a novel antiangiogenic therapeutic target in prostate cancer I Heidegger, G Fotakis, A Offermann, J Goveia, S Daum, S Salcher, ... Molecular Cancer 21 (1), 132, 2022 | 50 | 2022 |
| NeoFuse: predicting fusion neoantigens from RNA sequencing data G Fotakis, D Rieder, M Haider, Z Trajanoski, F Finotello Bioinformatics 36 (7), 2260-2261, 2020 | 28 | 2020 |
| Computational cancer neoantigen prediction: current status and recent advances G Fotakis, Z Trajanoski, D Rieder Immuno-Oncology and Technology 12, 100052, 2021 | 24 | 2021 |
| nextNEOpi: a comprehensive pipeline for computational neoantigen prediction D Rieder, G Fotakis, M Ausserhofer, G Rene, W Paster, Z Trajanoski, ... Bioinformatics 38 (4), 1131-1132, 2022 | 19 | 2022 |
| Container-aided integrative QTL and RNA-seq analysis of Collaborative Cross mice supports distinct sex-oriented molecular modes of response in obesity I Binenbaum, HAT Atamni, G Fotakis, G Kontogianni, T Koutsandreas, ... BMC genomics 21, 1-13, 2020 | 11 | 2020 |
| Functional and spatial proteomics profiling reveals intra-and intercellular signaling crosstalk in colorectal cancer C Plattner, G Lamberti, P Blattmann, A Kirchmair, D Rieder, Z Loncova, ... Iscience 26 (12), 2023 | 4 | 2023 |
| Glucocorticoid treatment influences prostate cancer cell growth and the tumor microenvironment via altered glucocorticoid receptor signaling in prostate fibroblasts A Eigentler, F Handle, S Schanung, A Degen, H Hackl, HHH Erb, ... Oncogene 43 (4), 235-247, 2024 | 1 | 2024 |
| Comparative Analysis of Whole Transcriptome Single-Cell Sequencing Technologies in Complex Tissues S Salcher, I Heidegger, G Untergasser, G Fotakis, A Scheiber, ... bioRxiv, 2023.07. 03.547464, 2023 | 1 | 2023 |
| Comparative analysis of 10X Chromium vs. BD Rhapsody whole transcriptome single-cell sequencing technologies in complex human tissues S Salcher, I Heidegger, G Untergasser, G Fotakis, A Scheiber, ... Heliyon 10 (7), 2024 | | 2024 |
| Phenotypic plasticity, spatial niches and cancer-associated fibroblast/mural cell interactions define the human prostate cancer microenvironment N Sampson, E Brunner, E Damisch, G Fotakis, Z Trajanoski, G Schäfer, ... | | 2023 |
| A novel calcium channel Cavβ2 splice variant with unique properties predominates in the retina H Seitter, J Obkircher, P Grabher, J Hartl, L Zanetti, UT Lux, G Fotakis, ... Journal of Biological Chemistry 299 (4), 2023 | | 2023 |
| Perturbation of fibromuscular cell states is contingent with prostate disease pathophysiology E Brunner, E Damisch, G Fotakis, Z Trajanoski, A Pircher, I Heidegger, ... European Urology Open Science 44, S152, 2022 | | 2022 |
| Functional heterogeneity of cancer-associated stromal subtypes in the prostate cancer microenvironment E Damisch, E Brunner, S Sopper, I Heidegger, A Pircher, G Fotakis, ... Cancer Research 82 (12_Supplement), 4013-4013, 2022 | | 2022 |
Zlatko TrajanoskiBiocenter, Institute of Bioinformatics, Medical University of InnsbruckVerified email at i-med.ac.at
